Showing posts with label epigenetic drugs. Show all posts
Showing posts with label epigenetic drugs. Show all posts

Sunday, 30 January 2022

Epigenetic Drugs, and Their Virtual Screening Study Retrieved from ZINC Database Along with an AutoDock Study of the Best Inhibitor | Chapter 04 | Current Aspects in Pharmaceutical Research and Development Vol. 7

 Cancer epigenetics research has advanced significantly in the previous 30 years. From embryogenesis to adulthood, epigenetic events play a role in the human life cycle. It is important to understand that epigenetic misregulation may contribute to cancer formation, and we must continue to search for anti-neoplastic epi-drugs. Taking this into account, our first goal is to use virtual screening to find effective epi-drugs from the ZINC database, as well as to investigate the validity of virtual screening. The second goal is to use a docking experiment to investigate the binding conformation of the highest affinity ligands against macromolecules.

Our Virtual Screening by Docking (VSDK) technique and procedure were used to accomplish the virtual screening. The ZINC database downloads small compounds at random. AutoDock 4.2.6 and AutoDock Tool were utilised in the docking experiment.The successful virtual screening of the 2778 tiny molecules chosen at random from the ZINC database took eight to ten hours. The first rated inhibitors of histone H2B E76K mutant (HHEM) and DNA methyltransferase (DNMT) were 1H-1,2,4-triazole-3,5-diamine and 2-ethyl-1,3,4-oxadiazole, respectively.

Conclusion: Most of the top 10 HHEM and DNMT inhibitors have 5-member rings in their chemical structures, as determined by virtual screening. A virtual screening experiment would be considered effective if the affinity difference between the top and bottom 10 compounds was greater than two times. The histogram chart of AutoDock4 runs showed two or three hydrogen bonds in the lowest affinity region, indicating a consistent conformation docking.

Author(S) Details

Eiichi Akaho
Faculty of Pharmaceutical Sciences, Kobe Gakuin Univercity, 1-1-3 Minatojima, Chuo-ku, Kobe, 6508586, Japan.

View Book:- https://stm.bookpi.org/CAPRD-V7/article/view/5412

Monday, 28 June 2021

Epigenetic Sensitisation of Chemotherapeutic Compounds in Non- Small Cell Lung Cancer | Book Publisher International

 Lung cancer is now the leading cause of cancer-related death worldwide, with 1.7 million fatalities in 2018. The most common kind of lung cancer is non-small cell carcinoma (NSCLC), which accounts for about 80% of all occurrences. In most countries, chemotherapy is still the first-line treatment for NSCLC patients. Chemotherapy is expected to be utilised for at least another two decades, despite the development of novel medicines (targeted chemicals, immunotherapy). Chemotherapy resistance is one of the key variables contributing to lung cancer mortality, and it has been well established in preclinical investigations and clinical trials to date. Currently, there are only a few biomarkers for predicting chemotherapy efficacy, most of which are clinical. Furthermore, clinically, sensitization of cancer cells to such chemicals is largely useless. This research looks into new ways for lung cancer cells to become sensitive to four standard chemotherapeutics (cisplatin, carboplatin, gemcitabine, and vinorelbine), with a focus on epigenetics and the involvement of extracellular vesicles. Cloning, inducible transgene expression, shRNA-based silencing, proliferation and apoptosis assays, the neutral comet assay, RT-qPCR, pyrosequencing-based DNA methylation analysis, and other molecular and cell biology methods (cloning, inducible transgene expression, shRNA-based silencing, proliferation and apoptosis assays, the neutral comet assay, RT-qPCR I examined a wide range of factors in connection to drug resistance in NSCLC cell lines (e.g., western blots, EV isolation and characterization). Resistant cell lines were chosen for sensitization with epigenetic medicines (VPA and DAC), aminomethylphosphonic acid (AMPA), and fendiline after the IC50 of each of the four medications was determined in eight NSCLC cell lines.


VPA showed strong chemotherapeutic sensitization potential for all four chemotherapeutics, which is a first for lung cancer cells. In cells treated with cisplatin or carboplatin, both VPA and DAC caused a considerable increase in apoptotic activity. Gemcitabine produced double strand DNA breaks in the NSCLC cell lines A549, CALU-6, and COR-L23, and pre-treatment with VPA amplified this impact, which was also a novel discovery in this investigation.

I also looked at the role of LANCL1-AS1, a long-noncoding RNA that was shown to be reduced in NSCLC tissues by our research team. Following the establishment of an inducible expression model in the SK-MES-1 cell line, it was discovered that LANCL1-AS1 induced an increase in proliferation rate, migration invasion, sensitivity to gemcitabine and vinorelbine, increased resistance to platin compounds, and, most notably, expression of its coding counterpart gene, LANCL1. The LANCL1 shRNA-based silencing resulted in a reduction in proliferation, migration, and oxidative stress sensitivity. However, sensitivity to all four medications followed the same pattern as overexpression of LANCL1-AS1, raising doubts about whether these two activities are connected or separate, with no way to rule out the possibility of off-target effects from the shRNA method at this time.

The function of extracellular vesicles (EVs) in cancer development and medication resistance has just lately been studied. As a result, I decided to see if the LANCL1-AS1-dependent gemcitabine sensitivity could be transferred to EVs. Increased LANCL1-AS1 expression resulted in a dose-dependent increase in EV release. Unfortunately, due to a variety of technical concerns with the EV isolation reagent's toxicity, knowledge of how LANCL1-AS1 produced EVs affect gemcitabine resistance when transmitted to a recipient cell line was not possible. Finally, this research has revealed some new insights towards sensitising NSCLC cells in a preclinical setting. More research is needed to determine whether these findings are clinically useful and how they might alter lung cancer treatment.

Author(s) Details

Ghaliah Obaid F. Alnefaie
Medical Genetic Department, Taif University, Taif, Saudi Arabia.

View Book:- https://stm.bookpi.org/ESCCNSCLC/article/view/1837