Monday 26 August 2024

A Systematic Review of Infectious Complications of Eculizumab | Chapter 10 | New Visions in Medicine and Medical Science Vol. 5

Eculizumab, first-line therapy for paroxysmal nocturnal hemoglobinuria (PNH) and atypical hemolytic uremic syndrome (aHUS) has infectious side effects in addition to its therapeutic benefits. The mechanism of development of infections, treatment modalities and preventive strategies for the associated infections have been discussed in this systematic review. The study was conducted using the Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) checklist and reporting guidelines. Inclusion and exclusion criteria were determined. A total of 18 research papers were extracted after exploring the databases from 2001 to 2024. The New Castle Ottawa Questionnaire for non-randomized clinical trials and observational studies, the National Institutes of Health (NIH) quality assessment tool for case reports and case series, and the scale for the quality assessment of narrative review articles checklist for literature review were used to assess the risk of bias. The bacteria causing infection secondary to eculizumab are Neisseria meningitidis, Neisseria gonorrhoeae, unusual Neisseria species, Moraxella lacunata, and Pseudomonas aeruginosa and fungus causing infection secondary to eculizumab is Aspergillus niger. Health care providers should maintain a high index of suspicion for these adverse effects for early identification and treatment.

Author(s) Details

 Ravneet K. Dhanoa
Department of Internal Medicine/Hematology, California Institute of Behavioral Neurosciences & Psychology, Fairfield, USA.

Ramaneshwar Selvaraj
Department of Internal Medicine/Family Medicine/General Surgery, California Institute of Behavioral Neurosciences & Psychology, Fairfield, USA.

Jyothirmai Malla
Department of Internal Medicine, California Institute of Behavioral Neurosciences & Psychology, Fairfield, USA.

Tharun Yadhav Selvamani
Department of General Surgery, California Institute of Behavioral Neurosciences & Psychology, Fairfield, USA.

Sathish Venugopal
Department of Neurology, California Institute of Behavioral Neurosciences & Psychology, Fairfield, USA.

Ranim K. Hamouda
Department of Internal Medicine, California Institute of Behavioral Neurosciences & Psychology, Fairfield, USA.

Pousette Hamid
Department of Neurology, California Institute of Behavioral Neurosciences & Psychology, Fairfield, USA.

 

Please see the link:-  https://doi.org/10.9734/bpi/nvmms/v5/3293G

 

Wednesday 21 August 2024

White paper: Fight of Sciencedomain international against Predatory Publication practices

Some open-access publishers publish papers without peer review to make easy money. Some publishers publish articles in their journals within one or two days after submission, provided publication charge is paid. Jeffrey Beall, the Denver-based former librarian, first coined the term “predatory publishing” in 2011, to identify such predatory journals. But at the later stage, his methodology to identify predatory journals was questioned. Many academicians proved that Beall's evaluation was biased and erroneous.  But nobody can deny the contribution of Mr. Beall to identify the black side of open access scholarly publication.

A normal Google search will reveal lots of websites giving some lists of so-called predatory publishers. But there is no validity and authenticity of such unofficial websites. Reasons are given below.

A] The above-mentioned websites are not real and authorized or endorsed by any Govt or International organizations or scholarly societies. There may be hundreds of similar websites. Developing such websites may cost only a few hundred dollars. Nobody knows about the real owners of those websites. These websites are not officially affiliated with any famous academic society or association.

B] The official list of predatory open-access journals was created and developed by Prof. Jeffrey Beall of Colorado University. He developed his famous Beall's list. But due to several court cases and due to several legal orders and other related issues he finally closed his website and deleted his list in 2017 (https://en.wikipedia.org/wiki/Predatory_publishing).  In fact, in 2017, he also lost his job at Colorado University.

C] From 2017, there is NO OFFICIAL list of Predatory Open Access journals approved by any Government organization or International organizations or scholarly societies. All the fake websites with the name of predatory journals are not approved.

Therefore there is no validity and authenticity of such unofficial websites.

‘Sciencedomain International’ (SDI) has fought against predatory publication practices for many years. ‘Sciencedomain International’ is also a victim of the predatory publication model. Many times ‘Sciencedomain International’ was labelled with a “predatory” stamp, as Sciencedomain also follows an open access publication model. Confusion and mixing the name of ‘Sciencedomain International’ with low-quality predatory publishers harmed the brand image of ‘Sciencedomain International’ in many ways.

Therefore Sciencedomain International took some proactive steps to fight against the predatory publication problem starting from 2011. Some distinguished operating principles of ‘Sciencedomain International’ are discussed below and the backgrounds of these steps are also discussed.

Problem 1: Predatory publishers don’t do peer review.

Following Proactive Steps were taken by Sciencedomain International to solve this problem.

1.1 OPEN Peer review:

‘Sciencedomain International’ journals follow a transparent and robust OPEN peer review model. All peer review reports, comments of the editors and different versions of the manuscripts are also made publicly posted along with the published paper. This process eradicates any possibility of malicious interference by the publisher to publish papers only for money, by compromising academic quality. The main complaint against predatory publishers is that anybody can publish anything by paying hefty money. And predatory publishers compromise the peer review process or don't do peer review to publish any paper. As ‘Sciencedomain International’ journals follow a transparent OPEN peer review model, so the main criteria of predatory publishing (i.e. absence of peer-review and quality control) cannot be applied against ‘Sciencedomain International’. Very politely we want to tell that our peer review system is not perfect. But we strongly want to say that we don't follow the predatory publication model.

1.2 World Famous Springer Nature journal report confirmed high standard of our journals

But to establish the claim of a publisher, it must be authenticated by some third-party neutral agency.  As per a recent paper published in a Springer Nature journal, we (SDI) received a high rank among the topmost Global Publishers to adopt modern transparent OPEN peer-review process (Details: https://link.springer.com/article/10.1007/s11192-020-03488-4). 

1.3 World famous Science journal report confirmed high standard of our journals

World famous Science Journal article authenticated high peer review standard of SDI journal

Now it is obvious that all publishers will highlight its brighter sides. But to establish the claim of a publisher, it must be authenticated by some third-party neutral agency. Please see that our claim of the high standard of peer review is authenticated by the world-famous Science journal article.  Please see the investigative report here ( https://www.science.org/doi/full/10.1126/science.2013.342.6154.342_60).

It was reported that out of total 304 journals, only 20 journals rejected the fake article after substantial peer review. We are happy that our journal was among these few successful journals along with industry leaders like PLoS One, Springer, BMC, MDPI, Hindawi, etc. 

1.4 Recently another Springer report also recognized the quality of Sciencedomain journals. Cabells’ Directory also reported Sciencedomain International as Non-predatory.  (https://link.springer.com/article/10.1007/s12109-022-09888-z) and

(https://www.graham-kendall.com/papers/ks2022a.pdf) 

Problem 2: Predatory publishers don’t pay any attention to complaints after publication

Following Proactive Steps were taken by Sciencedomain International to solve this problem. 

2.1 POST-publication peer review:

The pre-publication Peer review evaluation system is not perfect and many academicians proved loop-holes of the peer review system. We also never claimed that the peer review system is perfect. But we have tried to make it as transparent as possible. But still, we know that there will be errors. So we introduced also POST-publication peer review system.  SDI journal Websites provide the ability for users to comment on articles to facilitate community evaluation and discourse around published articles. The comment section is mainly dedicated to promote "Post-publication peer review".  As a result of this "Post-publication peer review", if authors agree and/or journal Editors agree (and/or SDI agrees) that any correction is necessary, then it will be published FREE of cost by following SDI Correction and Retraction policy (https://peerreviewcentral.com/page/correction-and-retraction-policy).

2.2 Established Retraction Policy:

No journal in the world has a hundred percent perfect peer review policy. It is not expected from the publisher that it should work like fraud detection agency or fake paper detection agency. No publisher has that capacity or enough resources for such activities. An academic publisher is expected to arrange honest peer review, editorial screening, editing, formatting, publication, DOI registration, digital preservation of papers, indexing of published papers, etc. An academic publisher depends on the integrity of the author for the submitted paper and expertise of reviewers and editors during the peer review process. At any stage, an academic publisher should never influence the publication decision by over-ruling the academic independence of the reviewers and editors. Therefore, a scholarly publisher is never expected to publish only a hundred percent perfect papers, as it depends on the author-reviewer-editor system. But an academic publisher is always expected to work promptly whenever fraud/wrongdoing is reported. If an academic publisher sits idle when an irreparable wrongdoing is reported then the publisher is just supporting the wrongdoing of the author. Such careless idle steps of the publisher rather encourage other dishonest authors to harbour their papers with that publisher. Predatory publishers often sit idly by publishing fake papers and invite other dishonest authors to publish their papers by providing a safe shelter in exchange for publication charges. It is expected that a true academic publisher should officially retract wrong papers/fake papers immediately whenever reported. Retraction is a negative point for any publisher, but a true academic publisher should never be afraid to retract such papers with official retraction notice. Sciencedomain International has a very strong and official correction/retraction policy (see here: https://peerreviewcentral.com/page/correction-and-retraction-policy). Sciencedomain International is determined to promote integrity in research publication. We have great respect and we generally follow the guidelines given by COMMITTEE ON PUBLICATION ETHICS (COPE) for any publication disputes, authorship disputes, fake paper, etc. Whenever such a serious problem is reported, Sciencedomain International takes immediate action and officially retract the paper.

Problem 3: Predatory publishers use the name of the reputed scientists without consent and sometimes they don’t do quality control during the recruitment of editors.

Following Proactive Steps were taken by Sciencedomain International to solve this problem.


3.1 Transparent Editorial Board:

All SDI journals have a transparent editorial board. Many times, predatory journals post the name of editors without their consent. Sometimes predatory journals publish fictitious editors. All SDI journals publish complete academic affiliation of all editors. Additionally, SDI journals publish email ID, short biography and link of the institutional webpage of editors for complete transparency. All communications with the editors are also permanently digitally preserved by SDI. Along with the published paper, identity and comments of the academic editor are also published. Therefore, very politely we want to say that we may not have the strongest editors of the world, but we have a highly transparent and active editorial board to maintain the quality of the journal.

3.2 World famous Nature journal report confirmed the high standard of SDI editors and journals

Now it is necessary to provide proof of the high standard of editors of SDI journals. We hereby provide the proof from an article of world-famous NATURE journal article. One of our journals was also targeted by the authors of this NATURE article as part of the sting operation.  We are happy to inform you that the Nature (Impact Factor: 41.6) article confirmed the high standard of SDI journal and its editors.  Please, read the investigative report here (https://www.nature.com/articles/543481a). 

Problem 4: Predatory publishers claim false indexing status, show false impact factor, highlight Thomson Reuters Researcher ID as proof of indexing in ISI, etc. 

Following Proactive Steps were taken by Sciencedomain International to solve this problem. 

4.1 Transparent Indexing information: A dedicated indexing team of Sciencedomain International is working to include all of our journals in reputed indexing services or journal evaluation services or catalogue or reference citations, etc. Sciencedomain International also advises that authors should cross-check the authenticity of claims of indexing before submitting their manuscripts to any publisher (including SDI). SDI strongly encourages authors to take 'informed decision' before submission of any manuscript. In order to help the authors to take 'informed decision', SDI is providing web-links/proofs beside most of the claims of indexing or journal evaluation services. In addition, authors should visit the official site of the indexing organization or journal evaluation services before submitting any manuscript. We have never applied to have a false impact factor (like global impact factor, etc) for our journals and we never display false impact factors of journals to cheat the authors. We hope the scholarly community will appreciate our efforts to maintain integrity and transparency. 

Problem 5: Predatory publishers don’t provide clear information regarding publication charges. They never provide information related to publication charge before or just after submission. They start demanding money after the publication.

Following Proactive Steps were taken by Sciencedomain International to solve this problem. 

5.1 Transparent Publication Charge: At Sciencedomain International, we clearly and publicly provide all information regarding publication charge in the journal website. Publication charge related all clear information is prior provided to all authors. There is strictly No hidden charge. 

Problem 6: Predatory publishers don’t provide clear information regarding the place of Head-Quarters of the publisher and actual place of operation. They also don’t reveal the name of the publisher.

Following Proactive Steps were taken by Sciencedomain International to solve this problem. 

6.1 Publicly available Headquarters address: Sciencedomain International clearly displays information regarding registered address and Head-Quarters in the contact page. Sciencedomain International also provides the name of the publisher and contact details.

 

Problem 7: Predatory publishers don’t provide attention to the satisfaction of authors. Actually, they harass the authors in different stages of publication. They are also not transparent regarding customer satisfaction.

Following Proactive Steps were taken by Sciencedomain International to solve this problem.

7.1 Direct posting of author feedback: At Sciencedomain International, we believe that quality peer review should attract appreciation from all authors, irrespective of the nature of the review decision (i.e. Acceptance or Rejection). Testimonials of the authors are presented publicly on our website. From 06-04-2016, Sciencedomain has provided direct comment posting feature in the website. Authors, who want to share their experience directly, can use this feature. We welcome any kind of feedback (positive or negative). Apart from this direct experience sharing facility, authors can also share their experience via email, which will be posted by our IT staff. We are proud to say that we take the satisfaction of authors very seriously. This may be the reason for our lowest possible “Credit Card Charge reversal and Dispute” cases against us (in some calendar years we have zero such cases).

Problem 8: Predatory publishers don’t provide attention to the satisfaction of reviewers and never maintain transparency (if they do peer review)

Following Proactive Steps were taken by Sciencedomain International to solve this problem.

8.1 Transparent information and recognition of reviewers: We follow the best possible industry standard for reviewer satisfaction. In all published papers, we publish the name of the reviewers and also publicly publish the review reports along with published papers. We also publicly publish the list of reviewers yearly once. Famous Publons (a part of Thomson Reuters Clarivate Analytics), also confirmed the high standard and transparency of the peer review system of SDI journals. There are more than 40,000 academic journals worldwide. As per Publons website, 6 journals from ‘Sciencedomain International’ were placed among top 1000 journals and  38 journals from ‘Sciencedomain International’ were placed among top 3000 journals like Nature, Science, PlosOne, BMJ, etc.

Problem 9: Predatory publishers are less attentive regarding plagiarism checking, formatting, etc

Following Proactive Steps were taken by Sciencedomain International to solve this problem.

9.1 Established Plagiarism Policy: SCIENCEDOMAIN international strongly opposes the practice of duplicate publication or any type of plagiarism. SCIENCEDOMAIN international aims to publish original high-quality research work. Plagiarized manuscripts would not be considered for publication. If plagiarism is found in any published paper after an internal investigation and subsequently the paper will be retracted. Plagiarism policy of this journal is mainly inspired by the plagiarism policy of The Nature

Problem 10: Predatory publishers falsely claim attachment with famous academic institutions like the publication of research papers from reputed universities, etc

Following Proactive Steps were taken by Sciencedomain International to solve this problem.

10.1 High Profile authors: High standard of SDI journals has attracted authors from world famous universities like  Harvard University,  Columbia University,  Cambridge University, University of Chicago,  UC Berkeley,  Göttingen University, etc. We are thankful to authors for keeping faith in our transparent high standard peer review process, high editorial standard, etc. Sciencedomain publishes a list of authors, who have published at least one paper in any SDI journal. A hyperlink of the published paper has been provided with the name of the author(s) for verification. This list is partial.

Problem 11: Predatory publishers don’t provide attention for permanent digital archiving of published papers

Following Proactive Steps were taken by Sciencedomain International to solve this problem.

11.1 Permanent digital preservation policy: Sciencedomain International is happy to announce that all our journals are now permanently archived in Journal Repository (JR).

Problem 12: Predatory publishers don’t provide attention to follow “Principles of Transparency and Best Practice in Scholarly Publishing”, introduced by OASPA, COPE, DOAJ and WAME

Following Proactive Steps were taken by Sciencedomain International to solve this problem.

12.1 Self-compliance report publication: Excellent guidelines regarding ‘Principles of Transparency and Best Practice in Scholarly Publishing’ have been established by the Committee on Publication Ethics, the Directory of Open Access Journals, the Open Access Scholarly Publishers Association and the World Association of Medical Editors. We sincerely thank OASPA-DOAJ-COPE-WAME for this great effort. Sciencedomain International feels that we must follow these guidelines and should publicly publish a ‘self-compliance report’ for public and scholarly scrutiny. We’ll heartily welcome any valuable feedback to improve our journal.

We have provided some information and facts.  We know that researchers/scientists always love to depend on their own logical reasoning and analytical power based on facts and proof.  We believe that the information provided above will help the academicians to make informed decisions.   

 

with regards,

Dr MB Mondal

Publisher and Director

Wednesday 7 August 2024

Usefulness of Dark Field Microscopy in the Epidemiological Study of Leptospirosis in Human Patients with Pyrexia | Chapter 9 | Research Perspectives of Microbiology and Biotechnology Vol. 3

 

The present retrospective study was carried out to assess the prevalence of leptospirosis and the associated risk factors in the epidemiology of the disease. Human leptospirosis is an anthropozoonoses. The disease is grossly underreported in India as diagnosis is often challenging due to its protean clinical manifestations in tropical countries and the lack of simple diagnostic measures

for early detection and control of the infection. In India is still being underreported though it has gained extreme public health importance, because of huge livestock and rodent populations and poor sanitary conditions. Fresh serum samples from 1730 human cases of different age and occupational groups, and either sex, with PUO or manifesting signs suggestive of leptospirosis were

received by the Leptospirosis Laboratory at the Department of Veterinary Epidemiology and Preventive Medicine, Veterinary College and Research Institute, Namakkal from various hospitals in and around Namakkal district of Tamil Nadu from June 2008 to May 2012. The study revealed a positivity of 51.7 % was observed and 85 % of the positive cases manifested a milder anicteric

leptospirosis. High positivity was observed in truck drivers (65.8%), age group of <20 years (55.4%), males (54.0%) and north-east monsoon (53.2%). From the calculated relative risk (RR), a strong positive association could be observed between truck drivers and males with the occurrence of leptospirosis. A prompt epidemiological investigation in susceptible animal populations along with an

unequivocal diagnosis of positives in humans exposed to the risk factors, in association with the periodical vaccination of susceptible animals and control of rodents, could possibly halt the emergence of the disease. The present study could identify the risk factors and a one health approach is required to create awareness among the public on zoonotic diseases including risk factors, and  prevention and control measures.

 

Authro(s) Details

Dr. S. Saravanan
Department of Veterinary Epidemiology and Preventive Medicine, Veterinary College and Research Institute, Namakkal - 637 002, India.

G. Selvaraju
Department of Veterinary Epidemiology and Preventive Medicine, Veterinary College and Research Institute, Namakkal - 637 002, India.

Please see the link:- https://doi.org/10.9734/bpi/rpmab/v3/289